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Abstract We present first results derived from the largest collection of contemporaneously recorded Jovian sodium nebula and Io plasma torus in [S II] 6731 Å images assembled to date. The data were recorded by the Planetary Science Institute's Io Input/Output observatory and provide important context to Io geologic and atmospheric studies as well as theJunomission and supporting observations. Enhancements in the observed emission are common, typically lasting 1–3 months, such that the average flux of material from Io is determined by the enhancements, not any quiescent state. The enhancements are not seen at periodicities associated with modulation in solar insolation of Io's surface, thus physical process(es) other than insolation‐driven sublimation must ultimately drive the bulk of Io's atmospheric escape. We suggest that geologic activity, likely involving volcanic plumes, drives escape. 

Abstract Since the Voyager mission flybys in 1979, we have known the moon Io to be both volcanically active and the main source of plasma in the vast magnetosphere of Jupiter. Material lost from Io forms neutral clouds, the Io plasma torus and ultimately the extended plasma sheet. This material is supplied from Io’s upper atmosphere and atmospheric loss is likely driven by plasma-interaction effects with possible contributions from thermal escape and photochemistry-driven escape. Direct volcanic escape is negligible. The supply of material to maintain the plasma torus has been estimated from various methods at roughly one ton per second. Most of the time the magnetospheric plasma environment of Io is stable on timescales from days to months. Similarly, Io’s atmosphere was found to have a stable average density on the dayside, although it exhibits lateral (longitudinal and latitudinal) and temporal (both diurnal and seasonal) variations. There is a potential positive feedback in the Io torus supply: collisions of torus plasma with atmospheric neutrals are probably a significant loss process, which increases with torus density. The stability of the torus environment may be maintained by limiting mechanisms of either torus supply from Io or the loss from the torus by centrifugal interchange in the middle magnetosphere. Various observations suggest that occasionally (roughly 1 to 2 detections per decade) the plasma torus undergoes major transient changes over a period of several weeks, apparently overcoming possible stabilizing mechanisms. Such events (as well as more frequent minor changes) are commonly explained by some kind of change in volcanic activity that triggers a chain of reactions which modify the plasma torus state via a net change in supply of new mass. However, it remains unknown what kind of volcanic event (if any) can trigger events in torus and magnetosphere, whether Io’s atmosphere undergoes a general change before or during such events, and what processes could enable such a change in the otherwise stable torus. Alternative explanations, which are not invoking volcanic activity, have not been put forward. We review the current knowledge on Io’s volcanic activity, atmosphere, and the magnetospheric neutral and plasma environment and their roles in mass transfer from Io to the plasma torus and magnetosphere. We provide an overview of the recorded events of transient changes in the torus, address several contradictions and inconsistencies, and point out gaps in our current understanding. Lastly, we provide a list of relevant terms and their definitions. 

Abstract The clapper rail (Rallus crepitans), of the family Rallidae, is a secretive marsh bird species that is adapted for high salinity habitats. They are very similar in appearance to the closely related king rail (R. elegans), but while king rails are limited primarily to freshwater marshes, clapper rails are highly adapted to tolerate salt marshes. Both species can be found in brackish marshes where they freely hybridize, but the distribution of their respective habitats precludes the formation of a continuous hybrid zone and secondary contact can occur repeatedly. This system, thus, provides unique opportunities to investigate the underlying mechanisms driving their differential salinity tolerance as well as the maintenance of the species boundary between the 2 species. To facilitate these studies, we assembled a de novo reference genome assembly for a female clapper rail. Chicago and HiC libraries were prepared as input for the Dovetail HiRise pipeline to scaffold the genome. The pipeline, however, did not recover the Z chromosome so a custom script was used to assemble the Z chromosome. We generated a near chromosome level assembly with a total length of 994.8 Mb comprising 13,226 scaffolds. The assembly had a scaffold N50 was 82.7 Mb, L50 of four, and had a BUSCO completeness score of 92%. This assembly is among the most contiguous genomes among the species in the family Rallidae. It will serve as an important tool in future studies on avian salinity tolerance, interspecific hybridization, and speciation. 

We discuss recent CTEQ-TEA group activities after the publication of the CT18 global analysis of parton distribution functions (PDFs) in the proton. In particular, we discuss a new calculation for the photon content in the proton, termed as CT18lux and CT18qed PDFs, and the impact of novel charm- and bottom-quark production cross section measurements at HERA on the CT18 global analysis. 

Abstract Decline and recovery timescales surrounding eclipse are indicative of the controlling physical processes in Io’s atmosphere. Recent studies have established that the majority of Io’s molecular atmosphere, SO₂and SO, condenses during its passage through Jupiter’s shadow. The eclipse response of Io’s atomic atmosphere is less certain, having been characterized solely by ultraviolet aurorae. Here we explore the response of optical aurorae for the first time. We find oxygen to be indifferent to the changing illumination, with [Oi] brightness merely tracking the plasma density at Io’s position in the torus. In shadow, line ratios confirm sparse SO₂coverage relative to O, since their collisions would otherwise quench the emission. Io’s sodium aurora mostly disappears in eclipse and e-folding timescales, for decline and recovery differ sharply: ∼10 minutes at ingress and nearly 2 hr at egress. Only ion chemistry can produce such a disparity; Io’s molecular ionosphere is weaker at egress due to rapid recombination. Interruption of a NaCl⁺photochemical pathway best explains Na behavior surrounding eclipse, implying that the role of electron impact ionization is minor relative to photons. Auroral emission is also evident from potassium, confirming K as the major source of far red emissions seen with spacecraft imaging at Jupiter. In all cases, direct electron impact on atomic gas is sufficient to explain the brightness without invoking significant dissociative excitation of molecules. Surprisingly, the nonresponse of O and rapid depletion of Na is opposite the temporal behavior of their SO₂and NaCl parent molecules during Io’s eclipse phase. 

Abstract We investigate the parton distribution function (PDF) uncertainty in the measurement of the effective weak mixing angleat the CERN Large Hadron Collider (LHC). The PDF-induced uncertainty is large in proton-proton collisions at the LHC due to the dilution effect. The measurement of the Drell-Yan forward-backward asymmetry () at the LHC can be used to reduce the PDF uncertainty in themeasurement. However, when including the full mass range of lepton pairs in thedata analysis, the correlation between the PDF updating procedure and theextraction leads to a sizable bias in the obtainedvalue. From our studies, we find that the bias can be significantly reduced by removing Drell-Yan events with invariant mass around theZ-pole region, while most of the sensitivity in reducing the PDF uncertainty remains. Furthermore, the lepton charge asymmetry in theWboson events as a function of the rapidity of the charged leptons,, is known to be another observable which can be used to reduce the PDF uncertainty in themeasurement. The constraint fromis complementary to that from, and thus no bias affects theextraction. The studies are performed using the error PDF Updating Method Package (ePump), which is based on Hessian updating methods. In this article, the CT14HERA2 PDF set is used as an example. 

We review progress in the global QCD analysis by the CTEQ-TEA group since the publication of CT18 parton distribution functions (PDFs) in the proton. Specifically, we discuss comparisons of CT18 NNLO predictions with the LHC 13 TeV measurements as well as with the FNAL SeaQuest and BNL STAR data on lepton pair production. The specialized CT18X PDFs approximating saturation effects are compared with the CT18sx PDFs obtained using NLL/NLO small-$$x$$ resummation. Short summaries are presented for the special CT18 parton distributions with fitted charm and with lattice QCD inputs. A recent comparative analysis of the impact of deuteron nuclear effects on the parton distributions by the CTEQ-JLab and CTEQ-TEA groups is summarized. 

Synopsis The 2020 SICB Society-wide Symposium “Building Bridges from Genome to Phenome: Molecules, Methods and Models” brought together a diverse group of scientists to discuss recent progress in linking phenotype plasticity to changes at the level of the genome, epigenome, and proteome, while exploring the boundaries between variation and speciation. In a follow-up workshop, participants were asked to assess strengths and weaknesses of current approaches, to identify common barriers inhibiting their progress, and to outline the resources needed to overcome those barriers. Discussion groups generally recognized the absence of any overarching theoretical framework underlying current genome to phenome research and, therefore, called for a new emphasis on the development of conceptual models as well as the interdisciplinary collaborations needed to create and test those models. Participants also recognized a critical need for new and improved molecular and bioinformatic approaches to assist in describing function/phenotypes across phylogeny. Additionally, like all scientific endeavors, progress in genome to phenome research will be enhanced by improvements in science education and communication both within and among working groups.